Institutions and organisations that successfully completed a Stage 1 project were eligible to apply for a three-year Stage 2 grant. The goal of Stage 2 projects is to further enhance the quality of care for individuals with HIV, viral hepatitis, and tuberculosis. This is achieved through research that builds on the outcomes, insights, and lessons learned from the Stage 1 pilot. Following the second call for Stage 2 proposals, three projects were selected to receive a Stage 2 grant.